P u b l i c a t i o n s

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2017

  • Akhondi, S. (2017). The biomedical abbreviation recognition and resolution (BARR) track: Benchmarking, evaluation and importance of abbreviation recognition systems applied to Spanish biomedical abstracts. , . [More] [Bibtex]

2016

  • Selecting Documents Relevant for Chemistry as a Classification Problem. (2016). European Knowledge Acquisition Workshop, . [More] [Bibtex]
  • Becker, B. F., Larson, H. J., Bonhoeffer, J., van Mulligen, E. M., Kors, J. & Sturkenboom, M. C. (2016). Evaluation of a multinational, multilingual vaccine debate on Twitter. Vaccine, . [More] [Bibtex]
  • Wilkinson, M. D., Dumontier, M., Aalbersberg, I. J., Appleton, G., Axton, M., Baak, A. et al. (2016). The FAIR Guiding Principles for scientific data management and stewardship. Scientific data, 3. [More] [Bibtex]
  • Hettne, K. M., Thompson, M., van Haagen, H. H., van der Horst, E., Kaliyaperumal, R., Mina, E. et al. (2016). The Implicitome: A Resource for Rationalizing Gene-Disease Associations. PloS one, 11(2), e0149621. [More] [Bibtex]
  • Wilkinson, M. D., Verborgh, R., Bonino da Silva Santos, L. O., Clark, T., Swertz, M. A., Kelpin, F. D. et al. (2016). Interoperability and FAIRness through a novel combination of Web technologies. PeerJ Preprints, 4, e2522v1. [More] [Bibtex]
  • LÓPEZ-GARCÍA, P., KREUZTHALER, M., SCHULZ, S., SCHERR, D., DAUMKE, P., MARKÓ, K. et al (2016). SEMCARE: Multilingual Semantic Search in Semi-Structured Clinical Data. In Health Informatics Meets EHealth: Predictive Modeling in Healthcare--From Prediction to Prevention. Proceedings of the 10th EHealth2016 Conference, pages 93. [More] [Bibtex]
  • Afzal, Z., Akhondi, S., van Haagen, H. H., van Mulligen, E. M. & Kors, J (2016). Concept Recognition in French Biomedical Text Using Automatic Translation. In International Conference of the Cross-Language Evaluation Forum for European Languages, pages 162-173. [More] [Bibtex]
  • van Mulligen, E. M., Afzal, Z., Akhondi, S., Vo, D. & Kors, J (2016). Erasmus MC at CLEF eHealth 2016: Concept recognition and coding in French texts. In. [More] [Bibtex]
  • Pons, E., Becker, B. F., Akhondi, S., Afzal, Z., van Mulligen, E. M. & Kors, J. (2016). Extraction of chemical-induced diseases using prior knowledge and textual information. Database, 2016, baw046. [More] [Bibtex]
  • Pons, E., Braun, L. M., Hunink, M. G. & Kors, J. (2016). Natural Language Processing in Radiology: A Systematic Review. Radiology, 279(2), 329-343. [More] [Bibtex]
  • Akhondi, S., Pons, E., Afzal, Z., van Haagen, H. H., Becker, B. F., Hettne, K. M. et al. (2016). Chemical entity recognition in patents by combining dictionary-based and statistical approaches. Database, 2016, baw061. [More] [Bibtex]

2015

  • Fehrmann, R. S., Karjalainen, J. M., Krajewska, M., Westra, H.-J., Maloney, D., Simeonov, A. et al. (2015). Gene expression analysis identifies global gene dosage sensitivity in cancer. Nature genetics, . [More] [Bibtex]
  • Krallinger, M., Rabal, O., Leitner, F., Vazquez, M., Akhondi, S., Kors, J. et al. (2015). The CHEMDNER corpus of chemicals and drugs and its annotation principles. Journal of Cheminformatics, (Suppl 1), S2. [More] [Bibtex]
  • Akhondi, S., Hettne, K. M., van der Horst, E., van Mulligen, E. M. & Kors, J. (2015). Recognition of chemical entities: combining dictionary-based and grammar-based approaches. J Cheminform, 7(Suppl 1), S10. [More] [Bibtex]
  • Akhondi, S., Muresan, S., Williams, A. & Kors, J. (2015). Ambiguity of non-systematic chemical identifiers within and between small-molecule databases. Journal of Cheminformatics, 7(1), 54. [More] [Bibtex]
  • Coloma, P. M., Becker, B. F., Sturkenboom, M. C., van Mulligen, E. M. & Kors, J. (2015). Evaluating Social Media Networks in Medicines Safety Surveillance: Two Case Studies. Drug Safety, , 1-10. [More] [Bibtex]
  • Pons, E., Becker, B. F., Akhondi, S., Afzal, Z., van Mulligen, E. M. & Kors, J. (2015). RELigator: Chemical-disease relation extraction using prior knowledge and textual information. Proceedings of the Fifth BioCreative Challenge Evaluation Workshop, 1, 247-253. [More] [Bibtex]
  • Akhondi, S., Pons, E., Afzal, Z., van Haagen, H. H., Becker, B. F., Hettne, K. M. et al. (2015). Patent mining: combining dictionary-based and machine-learning approaches. Proceedings of the Fifth BioCreative Challenge Evaluation Workshop, 1, 102-109. [More] [Bibtex]
  • Afzal, Z., Akhondi, S., van Haagen, H. H., van Mulligen, E. M. & Kors, J. (2015). Biomedical Concept Recognition in French Text Using Automatic Translation of English Terms. CLEF. [More] [Bibtex]
  • Kors, J., Clematide, S., Akhondi, S., van Mulligen, E. M. & Rebholz-Schuhmann, D. (2015). A} multilingual gold-standard corpus for biomedical concept recognition: the Mantra {GSC. , . [More] [Bibtex]
  • Nandal, U. K., Vlietstra, W., Byrman, C., Jeeninga, R. E., Ringrose, J. H., van Kampen, A. H. et al. (2015). Candidate prioritization for low-abundant differentially expressed proteins in 2D-DIGE datasets. BMC bioinformatics, 16(1), 25. [More] [Bibtex]
  • Masclee, G. M., Coloma, P. M., Spaander, M. C., Kuipers, E. J. & Sturkenboom, M. C. (2015). NSAIDs, statins, low-dose aspirin and PPIs, and the risk of oesophageal adenocarcinoma among patients with Barrett's oesophagus: a population-based case--control study. BMJ Open, 5(1), e006640. [More] [Bibtex]

2014

  • Pacurariu, A. C., Coloma, P. M., Trifiro, G., Straus, S. M., Schuemie, M. J., Gini, R. et al (2014). Combining Information from an Electronic Healthcare Database and Spontaneous Reporting Database for Enhancing Signal Detection. In PHARMACOEPIDEMIOLOGY AND DRUG SAFETY, pages 211-211. [More] [Bibtex]
  • Pacurariu, A. C., Coloma, P. M., Trifiro, G., Straus, S. M., Schuemie, M. J., Gini, R. et al (2014). A Comparative Analysis of Signal Detection in Electronic Healthcare Databases vs. Spontaneous Reporting Databases. In PHARMACOEPIDEMIOLOGY AND DRUG SAFETY, pages 497-497. [More] [Bibtex]
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