P u b l i c a t i o n s

2021

• Pognan, T. A., van Mulligen, E. M. & Kors, J. A. (2021). The eTRANSAFE Project on Translational Safety Assessment through Integrative Knowledge Management: Achievements and Perspectives. Pharmaceuticals, 14(3). [More] [Bibtex]

2020

• Vlietstra, W., van de Akker, M., Vos, R., van Mulligen, E. M. & Kors, J. A. (2020). Identifying disease trajectories with predicate information from a knowledge graph. Journal of Biomedical Semantics, 11, 9. [More] [Bibtex]
• Visser, J. J., de Vries, M. & Kors, J. A. (2020). Assessment of actionable findings in radiology reports. European Journal of Radiology, 129, 109109. [More] [Bibtex]
• Wagensveld, I. M., Weustink, A. C., Kors, J. A., Blokker, B. M., Hunink, M. G. & Oosterhuis, J. W. (2020). Effect of minimally invasive autopsy and ethnic background on acceptance of clinical postmortem investigation in adults. PLoS One, 15, e0232944. [More] [Bibtex]

2019

• Afzal, Z., Masclee, G. M., Sturkenboom, M. C., Kors, J. A. & Schuemie, M. J. (2019). Generating and evaluating a propensity model using textual features from electronic medical records. PLoS One, 14, e0212999. [More] [Bibtex]
• Wilkinson, M. D., Dumontier, M., van Mulligen, E. M., van der Lei, J. & Mons, B. (2019). Addendum: The FAIR Guiding Principles for scientific data management and stewardship. Scientific Data, 6, 6. [More] [Bibtex]
• Vlietstra, W., Vos, R., van Mulligen, E. M. & Kors, J. A. (2019). Using predicate information from a knowledge graph to identify disease trajectories. CEUR Workshop Proceedings, 2350. [More] [Bibtex]
• Malas, T., Vlietstra, W., Kudrin, R., Vos, R., van Mulligen, E. M. & Hette, K. M. (2019). Drug prioritization using the semantic properties of a knowledge graph. Scientific Reports, 9, 6281. [More] [Bibtex]
• Akhondi, S., Rey, H., Schwörer, M., Doornenbal, M., Gregory, M. & Kors, J. A. (2019). Automatic identification of relevant chemical compounds from patents. Database, 2019, baz001. [More] [Bibtex]

2018

• Singh, G., Kuzniar, A., van Mulligen, E. M., Gavai, A., Bachem, C. W., Visser, R. G. et al. (2018). QTLTableMiner ++: semantic mining of QTL tables in scientific articles. BMC Bioinformatics, 19, 183. [More] [Bibtex]
• Vlietstra, W., Vos, R., Sijbers, A., van Mulligen, E. M. & Kors, J. A. (2018). Using predicate and provenance information from a knowledge graph for drug efficacy screening. Journal of Biomedical Semantics, 9, 23. [More] [Bibtex]

2017

• Intxaurrondo, A., Pérez-Pérez, M., Rodriguez, G. P., Akhondi, S., Lourenço, A. & Krallinger, M (2017). The biomedical abbreviation recognition and resolution (BARR) track: Benchmarking, evaluation and importance of abbreviation recognition systems applied to Spanish biomedical abstracts. In IberEval 2017, pages 230-246. [More] [Bibtex]
• Wilkinson, M. D., Verborgh, R., da Silva Santos, L. O., van Mulligen, E. M., Bolleman, J. T. & Dumontier, M. (2017). Interoperability and FAIRness through a novel combination of Web technologies. PeerJ Computer Science, 3, e110. [More] [Bibtex]
• Becker, B. F., Avillach, P., Romio, S., van Mulligen, E. M., Weibel, D., Sturkenboom, M. C. et al. (2017). CodeMapper: semiautomatic coding of case definitions. A contribution from the ADVANCE project. Pharmacoepidemiology and Drug Safety, 26, 998-1005. [More] [Bibtex]
• Vlietstra, W., Zielman, R., van Dongen, R., Schultes, E. A., Wiesman, F., Vos, R. et al. (2017). Automated extraction of potential migraine biomarkers using a semantic graph. Journal of Biomedical Informatics, 71, 178-189. [More] [Bibtex]

2016

• Becker, B. F., Larson, H. J., Bonhoeffer, J., van Mulligen, E. M., Kors, J. A. & Sturkenboom, M. C. (2016). Evaluation of a multinational, multilingual vaccine debate on Twitter. Vaccine, 34, 6166-6171. [More] [Bibtex]
• Wilkinson, M. D., Dumontier, M., Aalbersberg, I. J., Appleton, G., Axton, M., Baak, A. et al. (2016). The FAIR Guiding Principles for scientific data management and stewardship. Scientific data, 3, 160018. [More] [Bibtex]
• Hettne, K. M., Thompson, M., van Haagen, H. H., van der Horst, E., Kaliyaperumal, R., Mina, E. et al. (2016). The implicitome: A resource for rationalizing gene-disease associations. PloS One, 11, e0149621. [More] [Bibtex]
• López-Garcia, P., Schulz, S., Kreuzthaler, M., Scherr, D., Daumke, P., Kors, J. A. et al. (2016). SEMCARE: Multilingual semantic search in semi-structured clinical data. Studies in Health Technology and Informatics, 223, 93-99. [More] [Bibtex]
• Afzal, Z., Akhondi, S., van Haagen, H. H., van Mulligen, E. M. & Kors, J. A (2016). Concept recognition in French biomedical text using automatic translation. In International Conference of the Cross-Language Evaluation Forum for European Languages, pages 162-173. [More] [Bibtex]
• van Mulligen, E. M., Afzal, Z., Akhondi, S., Vo-Hai, D. & Kors, J. A (2016). Erasmus MC at CLEF eHealth 2016: Concept recognition and coding in French texts. In CEUR Workshop Proceedings, pages 171-178. [More] [Bibtex]
• Pons, E., Braun, L. M., Hunink, M. G. & Kors, J. A. (2016). Natural language processing in radiology: A systematic review. Radiology, 279, 329-343. [More] [Bibtex]
• Wilkinson, M. D., Verborgh, R., Bonino da Silva Santos, L. O., Clark, T., Swertz, M. A., Kelpin, F. D. et al. (2016). Interoperability and FAIRness through a novel combination of Web technologies. PeerJ Preprints, 4, e2522v1. [More] [Bibtex]
• Pons, E., Becker, B. F., Akhondi, S., Afzal, Z., van Mulligen, E. M. & Kors, J. A. (2016). Extraction of chemical-induced diseases using prior knowledge and textual information. Database, 2016, baw046. [More] [Bibtex]
• Akhondi, S., Pons, E., Afzal, Z., van Haagen, H. H., Becker, B. F., Hettne, K. M. et al. (2016). Chemical entity recognition in patents by combining dictionary-based and statistical approaches. Database, 2016, baw061. [More] [Bibtex]