P u b l i c a t i o n s

2015

• Krallinger, M., Rabal, O., Leitner, F., Vazquez, M., Akhondi, S., Kors, J. A. et al. (2015). The CHEMDNER corpus of chemicals and drugs and its annotation principles. Journal of Cheminformatics, 7(Suppl 1), S2. [More] [Bibtex]
• Akhondi, S., Muresan, S., Williams, A. & Kors, J. A. (2015). Ambiguity of non-systematic chemical identifiers within and between small-molecule databases. Journal of Cheminformatics, 7, 54. [More] [Bibtex]
• Coloma, P. M., Becker, B. F., Sturkenboom, M. C., van Mulligen, E. M. & Kors, J. A. (2015). Evaluating social media networks in medicines safety surveillance: two case studies. Drug Safety, 38, 1-10. [More] [Bibtex]
• Pons, E., Becker, B. F., Akhondi, S., Afzal, Z., van Mulligen, E. M. & Kors, J. A. (2015). RELigator: Chemical-disease relation extraction using prior knowledge and textual information. Proceedings of the Fifth BioCreative Challenge Evaluation Workshop, , 247-253. [More] [Bibtex]
• Akhondi, S., Pons, E., Afzal, Z., van Haagen, H. H., Becker, B. F., Hettne, K. M. et al (2015). Patent mining: combining dictionary-based and machine-learning approaches. In Proceedings of the fifth BioCreative challenge evaluation workshop, pages 102-109. [More] [Bibtex]
• Afzal, Z., Akhondi, S., van Haagen, H. H., van Mulligen, E. M. & Kors, J. A (2015). Biomedical Concept Recognition in French Text Using Automatic Translation of English Terms. In CLEF 2015 Working Notes. CLEF. [More] [Bibtex]
• Kors, J. A., Clematide, S., Akhondi, S., van Mulligen, E. M. & Rebholz-Schuhmann, D. (2015). A} multilingual gold-standard corpus for biomedical concept recognition: the Mantra GSC. Journal of the American Medical Informatics Association, 22, 948-956. [More] [Bibtex]
• Akhondi, S., Hettne, K. M., van der Horst, E., van Mulligen, E. M. & Kors, J. A. (2015). Recognition of chemical entities: combining dictionary-based and grammar-based approaches. J Cheminform, 7(Suppl 1), S10. [More] [Bibtex]

2014

• Kang, N., Singh, B., Bui, C., Afzal, Z., van Mulligen, E. M. & Kors, J. A. (2014). Knowledge-based extraction of adverse drug events from biomedical text. BMC Bioinformatics, 15, 64. [More] [Bibtex]
• Akhondi, S., Klenner, A. G., Tyrchan, C., Manchela, A. K., Kors, J. A. & Muresan, S. (2014). Annotated chemical patent corpus: a gold standard for text mining. PloS One, 9, e107477. [More] [Bibtex]
• Bui, C., Sloot, P. M., van Mulligen, E. M. & Kors, J. A. (2014). A novel feature-based approach to extract drug-drug interactions from biomedical text. Bioinformatics, 30, 3365-3371. [More] [Bibtex]
• Afzal, Z., Pons, E., Kang, N., Sturkenboom, M. C., Schuemie, M. J. & Kors, J. A. (2014). ContextD: an algorithm to identify contextual properties of medical terms in a Dutch clinical corpus. BMC Bioinformatics, 15, 373. [More] [Bibtex]